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PROGRAMME SUPPORT AND CENTRES OF EXCELLENCE


Programme based support is provided to research groups at institutions/universities in terms of equipment and seed funds for undertaking basic research in modern biology and strengthening the ongoing research activities. It also helps to develop centres of excellence in various branches of modern biology and biotechnology. The support usually involves establishment of common facilities for use by an interdisciplinary group of scientists pursuing common research objectives and is open to other users from various institutions at cost.


Indian Institute of Science, Bangalore

Over 20 potential leads available for product and process development in the areas of agriculture (genetically engineered plants), healthcare (vaccines and diagnostics) and drug development are being pursued by the institute towards logical conclusion. Significant achievements include studies on characteristics of a nonactivating voltage dependent potassium channel, high level expression of glycoprotein hormones in Pichia and interactions of monoclonal antibodies with hCG. About 200 publications have been made in national and international journals and 5 patents have been filed.


Basic Biology and Microbial Pathogens

The programme has a focus on studies on the biology of pathogenic bacteria, viruses, yeast and parasite relevant to pathogenesis, virulence and pathogen host interactions leading to the onset and progression of diseases they cause. All stages in the life cycle of the pathogens leading to the disease status such as DNA functions, RNA transactions, protein synthetic and degradation machinery and cell division phenomenon will be studied at the molecular level. The pathogens namely mycobacteria, Japanese encephalitis virus, rotavirus, hepatitis A virus, Peste des petits ruminans virus, Candida albicans and Plasmodium falciparum, resposible for the infectious diseases of man and animals are being used to investigate the fundamental processesresponsible for the multiplication of the organisms andtheir interaction with hosts. Efforts are being made to analyse potential drug targets, develop new vaccinecandidates, and to explore testing of edible vaccine for protection in challenged animals and to develop combination rabies vaccine


Molecular diversity and design

The programme in basic research has main objectives to explore molecular diversity generated by combinational approaches, natural libraries and by specific design strategies. It is proposed to develop peptide and aptamer libraries from phage pools and oligonucleotide libraries, respectively. A program to exploit structural diversity in secondary metabolites, primarily peptides from fungal sources is being devloped. The use of structural principal in molecular design is being extended to construction of peptidomimetics and model protein structures. A large component of the program is probing structure-activity relationships in chosen systems, including the guanylcyclase receptor, gonadotropin releasing hormones, RNA ploymerase, methyltransferases and lectins.


University of Bangalore, Bangalore

This programme support was provided with objectives of collection and conservation of rare, endangered, endemic orchids of western ghats; rapid clonal multiplication of non-embryogenic and embryogenic propagules from selected target species of  orchids; indirect organogenesis using different explants; hardening of in vitro plants and their field establishment; development of field genebank of rare, endangered and endemic medicinal plants and also selected high medicinal value target species; and development of a seed genebank of selected target species.

Current activities include induction of fruit setting in orchids, morphological and cytological studies of target species of medicinal plants. Land sites are being developed. A design for the orchidorium has been prepared and construction will be completed soon. In vitro seed germination of orchids and plantlets establishment, rapid clonal multiplication using different ex-plants through direct and indirect regeneration and establishment of in vitro bank of target species as low culture are being carried forward. Efforts are being made to multiply and transplant the specimens of economic and medicinal value in its natural habitat. Efforts are also being made to deposit the material collected in the laboratory to the gene bank /tissue culture repository.


Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram

Significant achievements accomplished through the major “Programme Support” provided by the Department are highlighted below.

Infectious Diseases

The collection of local isolates of M. tuberculosis from patients around Thiruvananthapuram continued and the drug sensitivity of the isolates was assessed. Amplified fragment length polymorphism was done on selected samples and apparent differences between field strains and type strains H37 Rv and Ra are being further investigated. Studies were carried out on profiling the genome of the local isolates for the most significant difference in the RD1 region. To study their distribution in the field strains, 58 RD primers were designed to amplify the 16 regions from local isolates. Using primers spanning Rv3874 and Rv3875 from the RD1 region, an additional 400 basepair band was identified in thelocal strains. The region corresponding to this band was identified as moaA3 (molybdopterin cofactor biosynthesis protein A) and this gene was observed in BCG and most local isolates. In a collaborative effort with Central JALMA, Agra, isolates from north Indian region were also examined and variations in moaA3 region were observed.

Plant Molecular Biology

Cardiospermum halicacabum Linn. (Sapindaceae) is a herbaceous medicinal plant used in Ayurveda and folk medicine for the treatment of rheumatism, ear ache, fever etc. Ethanol as well as n-hexane extracts of C. halicacabum showed comparable antipyretic activity against yeast-induced pyrexia in rats. Alcohol extract was observed to significantly inhibit the gastric ulcers induced by oral administration of absolute alcohol. Increased stomach weight and ulcer index were observed to reduce significantly. The extract also exhibited potent in vitro hydroxyl radical scavenging and inhibition of lipid peroxidation activities. The extract did not show any conspicuous toxicity in short-term toxicity evaluation in rats. Studies were initiated on efficient regeneration and genetic transformation procedures to incorporate resistance to quick wilt. Disarmed Agrobacterium tumefaciens strain harbouring binary plasmid pCAMBIA 1301 was used as a vector system for transformation studies. The plasmid contains the gene for selection on hygromycin, a gene CaMV35S as promoter and ‘gus’ chimeric gene as the scorable marker. Explants infected by Agrobacterium suspension exhibited transient GUS expression for callus as well as young shoot bud after two weeks in regeneration medium. The PCR screening confirmed the putative transformants in the positive control (plasmid DNA) and absence in control plants. This was further confirmed by Southern hybridization. Putative transformants produced shoots and roots after a month in basal medium. Since roots are generally more sensitive to antibiotics, the ability to root on selection medium containing antibiotics was considered a strong indication of transformation. The results make it possible to genetically improve black pepper.

A PCR based SSH technique was used to identify the genes that are differentially expressed in response to the signaling molecule salicylic acid (SA) through a repeatable protein induction protocol in Piper colubrinum . This was followed further to develop a subtracted cDNA library generated by suppression subtractive hybridization (SSH) technique using the PCR select cDNA subtraction kit. The subtracted sample was cloned into a T/A cloning vector and was transformed into competent JM109 cells to prepare a subtracted cDNA library. A total of 130 clones were obtained. Around 90% of the selected clones were having insert when checked using nested PCR primers. Plasmid DNA’s of 20 clones were purified and subjected to sequencedetermination. More than a quarter of the clones yielded sequence homology to known stress related genes. Among them a 315 bp fragment showed 67 % homology to Vitis vinifera thaumatin-like protein and 61 % homologies to Hordeum vulgare thaumatin-like protein and Oryza sativa pathogenesis-related thaumatin-like protein mRNA was obtained.

Molecular Basis of Biological Functions

Defects in apoptosis render cancer cells resistant to therapy. Studies were conducted using a variety of tumor cells to substantiate the importance of certain regulatory molecules of apoptosis in inherent chemoresistance in cancer. Mutational inactivation of Bax, a pro apoptotic protein was observed to prevent cell death induced by a variety of anticancer agents by suppressing mitochondrial release of cytochrome C and apoptosis inducing factor (AIF). Ku 70, a subunit of Ku protein complex involved in DNA repair, was found to play a major role in keeping the Bax protein in inactive conformation even during apoptotic stresses. Antisense silencing of Ku 70 protein were able to sensitize colon cancer cells to drug induced cell death. Also over expression of Ku70 prevented cell death substantiating its importance in chemoresistance. Studies using caspase 3 deficient breast cancer cell line and its retrovirally trasnsfected caspase positive cells substantiated the essential role of this caspase in cell death. Its absence completely prevented the processing of caspase 8 and DNA condensation in response to different anticancer agents. The release of cytochrome C or AIF in response to anticancer agents was prevented in caspase 3 deficient cells. Ectopic introduction of an anti apoptotic protein Bcl-XL or Bcl2 completely prevented the release of cytochrome C, AIF and processing of caspase 8 in caspase 3 deficient cells. Mutational inactivation of caspase 3 and over expression of Bcl2 family proteins are frequently observed in breast carcinoma samples. This substantiates that the interplay of these two proteins renders breast tumors more aggressive and resistant to anticancer agents. The experiments substantiated the importance of Bax, BclXL, KU70 and caspase 3 as major players of drug resistance and the underlying mechanism; and highlighted certain interventional approaches targeting these proteins to bypass the phenomenon drug resistance in cancer.

g-tubulin has been identified as the nucleating agent in the cell although the mechanism is not well known. In order to study the mechanism of process of mitosis as well as in abnormal situations like cancer, g-tubulin complex from goat brain was partially purified and affinity purification of the g-tubulin complex using an antibody against a C-terminal peptide of g-tubulin is in process. Diamino thiazole (DAT1) showed cytotoxicity with low GI50 values in different malignant cell lines, and better efficacy than paclitaxel and vinblastine towards a multidrug resistant cancer cell line at concentrations that do not impair the viability of normal epithelial cells. It was also observed to block mitosis in the prometaphase and metaphase stages. In HeLa cells, DAT1 blocks the spindle function by disturbing spindle microtubule and chromosome organization, inhibits assembly of brain microtubules and binds tubulin specifically at a single site with induction of fluorescence. The binding site of DAT1 on tubulin was observed to overlap with that of the conventional colchicine-binding site. Although taxanes and vinca alkaloids have been partially successful in the treatment of different types of malignancies, their use is limited by the development of drug resistance, neurotoxicity and limited availability leading to high expenses involved. Based on the cytotoxic, antimitotic and tubulin binding properties, DAT1 can be considered as a lead compound of a new class of small molecules in developing potent antimitotic agents for the control of cytoskeletal functions and cell proliferation. It would also be an interesting probe for the structure-function studies of tubulin-microtubule system. Patent (Indian and PCT) applications have also been filed for this work.




Programme for micropropagation research and technology development

Activities continued in the micropropagation technology park at TERI, New Delhi and NCL, Pune. Some salient features of the progress made during the period of report are given below :

The Energy and Resources Institute, New Delhi

Large Scale Production

· About 7.5 lakh tissue-cultured plants of various species were produced/ dispatched from TERI’s production facility for distribution among various end users for field demonstration and routine plantation. This includes plants of forest species (Paulownia, Eucalyptus, Bambusa etc), cash crops (Vanilla, hops), fruit crops (strawberry), medicinal plants (Aloe vera, Swertia chirata) and ornamentals (as filler species). Over 42,000  tissue-cultured plants of Paulownia were dispatched; 14,300 plants were sent to FDAs in eight states for network level field performance trials as per the details provided below :
SDNP-Database
Sl. No.
State
Location
No. of plants
1.
Orissa
Raigada - 3 locations (Raigada, Puri & Sambalpur
3300

2.

Maharashtra
Gondia
1100
Pune
1100
Dahanu
1100
3.
Karnataka
Bangalore
1100

4.

Andhra Pradesh
Hyderabad
1100
Tirupati
1100
5.
Rajasthan


Karauli
1100
6.
MP
Betul
1100
7.
Gujarat
Bhuj
1100
8.
Haryana
Faridabad
1100
Total                             
13 sites
14,300
The initial feedback received from the concerned FDAs suggests mixed performance of the plants in the field. In one of the field trials being carried out at a farmhouse in Chattarpur, New Delhi, 385 tissue-cultured plants (in 3 replicates) were transferred to the field in May, 2003. Within 5 months, the plants had attained an average plant height of more than 9.4 ft and GBH of more than 9.7 cm in all 3 replicates.

· In vitro cultures of two eucalyptus hybrids viz. F- 14 and F-5 obtained from FRI, Dehradun were bulked-up. About 14,400 tissue-cultured plants were produced and supplied. In addition to these hybrids, few other clones were also multiplied. About 34,000 tissue-cultured plants of eucalyptus were dispatched to various growers for planting.

· Bambusa bambos has been identified as a priority species for plantation under the bamboo mission launched by Government of India. Since B. bambos is a thorny species, its demand is rather restricted. Using seeds from a less thorny clump identified by bamboo researchers in natural forests of Karnataka, about 1.1 lakh plants of Bambusa bambos were produced this year. Out of these, 32,000 plants have already been dispatched including 25,000 plants to Forest Department, Haldwani and 2,000 plants to Kerala Forest Research Institute, Peechi for field demonstrations. Dendrocalamus asper has been introduced into production this year. By July 2005, 20,000 – 30,000 tissue cultured plants will be dispatched to Uttaranchal, North-east, KFRI and other locations for field demonstration and routine plantation

· Large-scale multiplication of vanilla was undertaken during the year and over 4 lakh tissue cultured plants were produced. Out of these, over 2 lakh tissue culture raised plants have been dispatched to TERI’s satellite centre at Guwahati for hardening. These would be supplied to the growers in North-Eastern states through Spices Board, state horticulture departments and other agencies.

· Over 1 lakh tissue cultured plants of Aloe vera were produced. Over 31,000 plants have been dispatched. The remaining plants are at different stages of hardening and will be supplied to farmers and private growers in the next planting season.

· Over 1 lakh tissue cultured plants of Swertia chirayita were produced. These are being hardened and will be sent to Supi, Uttaranchal for secondary hardening.

· Among fruit crops, the emphasis has been on strawberry and banana. Approximately 38,000 tissue cultured plants of two varieties of strawberry namely, ‘Chandler’ and ‘Ophra’ were dispatched. Mass multiplication of banana (variety ‘Sabri’) is in progress. About 5,000 tissue cultured plants of this variety will be supplied to Tripura State Council for Science and Technology, Government of Tripura, Agartala during 2005.

· The rootstocks of apple were introduced into production this year. The virus-free nature of the rootstocks was confirmed through virus-indexing at the National Facility for Virus Diagnosis and Quality Control of Tissue Cultured Plant at IARI, New Delhi. The rooting for two of the rootstocks, MM 106 and M7, has been optimized (80-90%). The plants are being hardened at TERI’s MTP facility.

· Production of tissue cultured plants of imported citrus rootstock varieties has been initiated. Twelve varieties of rootstocks are being multiplied for Punjab Agri-Export Corporation Limited (PAGREXCO).

· Micropropagation protocol for hops has been optimized and a total of 6200 plants of “Lahul bitter” variety have been supplied to a private grower under contractual production.


Research & Development: has been supported for micropropagation protocol standardization and refinement of important species- Walnut, Steviarebaudiana, Bambusa tulda, Dendrocalamus hamiltonii and Jatropha curcas

Walnut : Some important Indian and exotic varieties of walnut were identified and germplasm collected from authentic sources. Aseptic cultures using single node segment were initiated. Presently, cultures of several scion varieties and rootstocks are at shoot multiplication stage.

Bambusa tulda (adult) : Shoot multiplication has been achieved; inspite of extensive experimentation, there has not been much success with rooting. Further experiments in this direction are underway

Dendrocalamus hamiltonii (adult) : Shoot multiplication by axillary branching method and upto 65% rooting has been achieved. Further experiments to improve the rooting frequency and quality of rooting are in progress.

Jatropha curcas : In an attempt to develop micropropagation protocol for Jatropha, large number of in vitro cultures were initiated. The cultures are at the early stages of shoot multiplication.


Training

The following training programmes and farmer meets have been organized:

· Two farmer meetings and a training programme on seed production technology were organized at Supi farm. These meets and training programmes covered all the aspects of cultivation, and management of diseases and weeds.

· Training programme on plant tissue culture hardening for grass-root level workers was organized at Ramanreti Ashram, Mathura

· Training programmes were also organised on potatocultivation at MTP Gwal Pahari

In addition, several trainees from BCIL and other academic institutions were also imparted training in plant tissue culture. Presently two trainees from Board of Apprenticeship Training for apprenticeship/training of 10 + 2 vocational certificate holders are undergoing training at MTP.




National Chemical Laboratory, Pune

Research and development for improvement:

Extensive R&D work is being carried out for development of micropropagation protocols for identified priority crop species. Success has already been obtained in Acacia mangium and Eucalyptus pellita. Studies are being focussed on Casuarina and Jatropha curcas.

Casuarina equisetifolia : Micropropagation studies were carried out pertaining to culture initiation and establishment, multiplication and in vitro rooting in C. equisetifolia.

Jatropha curcas : Tissue culture micropropagation of high yielding, high oil containing clones has great significance for rapid multiplication of these identified clones.

For the experimental studies, cuttings were collected from Indira Gandhi Agriculture University, Raipur and College of Forestry, Dr. Panjabrao Deshmukh Krishi Vidyapeeth, Akola. Cultures were successfully established from the nodal explants collected from the cuttings growing in the greenhouse at NCL. The cultures in multiplication stage are being further tested for their rooting ability in vitro.

Large scale production and demonstration

Demonstration of the performance of tissue cultured plantlets of turmeric, ginger, banana, Chlorophytum and teak is being carried out in the farmers field at Landewadi, Kalewadi, Alephata, Belwadi, Rui, Malegaon near Baramati, Maharashtra and Lonkar Krishi Udyog, Solapur in Maharashtra. About 20 farmers have been involved. Tissue culture raised turmeric plants yielded two times more (300-350g./plant) as compared to conventional plants (150-200g/ plant). At Chaudhary Plantation, Raipur among the clones NC-21, NE, TD of teak tested, clone NC-21 has shown best performance. The data is being collected and monitored for the plants which were planted by the tissue culture pilot plant in 1994. Average height is 15m and average GBH is 50 cm. Thinning of this trial has been done and trees are exhibiting higher growth rate after thinning. The wood poles obtained by thinning have the salable size. The trial is monitored regularly by NCL Scientists and quarterly reports on growth performance are recorded. Wood density analysis of the samples collected from field trial indicate average dry basic density of 671.27 kg/m3 of tissue culture raised plants as against average 620.51 kg/m3 of seed raised control plants. The ecological balance of the area has improved mainly due to the plantations.

Training

Training programme on micropropagation was organized during May 10-21, 2004. In the two week programme first week training was on general laboratory techniques and introduction on cell and tissue culture. In the second week, advanced hands on training on micropropagation of Eucalyptus and Banana from culture initiation to hardening of plants alongwith testing of clonal homogeneity using molecular markers. Training on different aspects of plant tissue culture was also imparted to students from different universities.
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